利用计算生物学方法识别原核启动子的研究进展

A Brief Review for Identifying Prokaryotic Promoters Based on Computational Biology

  • 摘要: 原核启动子作为DNA中的一个关键区域,含有RNA聚合酶特异性结合和基因转录起始所需的保守序列,在转录调控中发挥着重要作用。然而,由于实验方法在实验周期和实验耗材上的限制,对启动子序列进行批量准确的鉴定仍然是分子生物学领域一项艰巨的任务。随着计算机技术的发展,出现了多个基于计算生物学的原核启动子预测方法,这些方法在数据质量、数据集大小、提取的特征、特征选择技术、分类算法以及评估策略方面表现出高度的多样性。该文系统地比较并总结这些方法,以便改进和进一步发展原核启动子识别技术。

     

    Abstract: As a key region of deoxyribonucleic acid (DNA), prokaryotic promoter contains the conserved sequence required for specific binding of ribonucleic acid (RNA) polymerase and transcription initiation, and plays an important role in transcription regulation. However, due to the limitations of experimental methods that are long experimental period and high cost, the identification of prokaryotic promoter sequences remains a major challenge. With the development of computer technology, dozens of prokaryotic promoter identification methods based on computational biology have emerged, which show a high degree of diversity in terms of data quality, dataset size, extracted features, feature selection techniques, classification algorithms and evaluation strategies. Thus, there is an urgent need to systematically compare and summarize these methods so as to improve and further develop prokaryotic promoter recognition techniques.

     

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